NAME

       mzxmlconverter              —              converts  data  from  Bruker's  timsTOF line of
       instruments to mzXML

SYNOPSIS

       mzxmlconverter [options]

DESCRIPTION

       This manual page documents briefly the mzxmlconverter software.

       This program can be used to convert data from Bruker's  timsTOF  line  of  instruments  to
       mzXML directly to the standard output or in an output file

OPTIONS

       -h | --help
                 Displays detailed usage information and exits.

       -v | --version
                 Print the version of the software program.

       -o, --output output
                 Optionally set mzXML output path. If not given, mzXML is written on the standard
                 output.

       -i mz data file
                 path to the Bruker's data directory or to the mz data file (mgf, mzML...)

       -d, --dalton dalton
                 Optionally set TimsTOF MS2 measurement precision in dalton (+-0.02  by  default)
                 to build suitable MS2 filters.  Only relevant when converting TimsTOF data.

       -c, --cpus number
                 Number of CPUs to use.

Bibliographic reference to be cited

       Langella   O,   Valot   B,  Balliau  T,  Blein-Nicolas  M,  Bonhomme  L,  Zivy  M.  (2017)
       X!TandemPipeline:  A  Tool  to  Manage  Sequence  Redundancy  for  Protein  Inference  and
       Phosphosite Identification. J. Proteome Res., 2 (16) 494-503

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