NAME

       rnr-prune  -  prunes  a  list  of  taxa from a bootstrap tree or a single tree with branch
       lengths

DESCRIPTION

       This is RnR-prune version 1.0 released by Andre J. Aberer in 2011-10-25.

       This program prunes a list of taxa from a bootstrap tree or  a  single  tree  with  branch
       lengths (such as a best-known ML/MP-tree).

       SYNTAX:  rnr-prune  [-i  <bootTrees>  |  -t  <treeFile>]  -x  <excludeFile> -n <runId> [-w
       <workingDir>] [-h]

              OBLIGATORY:

       -x <excludeFile>

              A list of taxa (one taxon per line) to prune from either the bootstrap trees or the
              single best-known tree.

       -i <bootTrees>

              A collection of bootstrap trees.

       -t <treeFile>

              A single tree with branch lengths. Use either this flag or the -i flag.

       -n <runId>

              An identifier for this run.

              OPTIONAL:

       -w <workDir>

              A working directory where output files are created.

       -h

              This help file.

AUTHOR

       This  manpage  was written by Nilesh Patra for the Debian distribution and can be used for
       any other usage of the program.