Provided by: libvcflib-tools_1.0.3+dfsg-1_amd64 bug

NAME
       vcfentropy


SYNOPSIS
       vcfentropy options


DESCRIPTION
       Annotate  VCF  records with the Shannon entropy of flanking sequence.  Anotates the output
       VCF file with, for each record, EntropyLeft, EntropyRight, EntropyCenter,  which  are  the
       entropies  of  the sequence of the given window size to the left, right, and center of the
       record.  Also adds EntropyRef and EntropyAlt for each alt.


OPTIONS
              options:
                  -f, --fasta-reference  FASTA reference file to use to obtain flanking sequences
                  -w, --window-size      Size of the window over which to calculate entropy

              Type: metrics


EXIT VALUES
       0      Success

       not 0  Failure


SEE ALSO
       vcflib(1)


OTHER
LICENSE
       Copyright 2011-2022 (C) Erik Garrison and vcflib contributors.  MIT licensed.


AUTHORS
       Erik Garrison and vcflib contributors.