Provided by: libvcflib-tools_1.0.3+dfsg-1_amd64 bug

NAME
       vcfgeno2haplo


SYNOPSIS
       vcfgeno2haplo options []


DESCRIPTION
       Convert  genotype-based  phased  alleles within –window-size into haplotype alleles.  Will
       break haplotype construction when encountering non-phased genotypes on input.


OPTIONS
              options:
                  -h, --help              Print this message
                  -v, --version           Print version
                  -r, --reference FILE    FASTA reference file
                  -w, --window-size N     Merge variants at most this many bp apart (default 30)
                  -o, --only-variants     Don't output the entire haplotype, just concatenate
                                          REF/ALT strings (delimited by ":")

              Type: transformation


EXIT VALUES
       0      Success

       not 0  Failure


SEE ALSO
       vcflib(1)


OTHER
LICENSE
       Copyright 2011-2022 (C) Erik Garrison and vcflib contributors.  MIT licensed.


AUTHORS
       Erik Garrison and vcflib contributors.