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       openms-doc - library for LC/MS data management and analysis - documentation


       This  manual  page  documents  briefly  the  openms-doc  package that brings a full set of
       documentation  and  tutorials  to  the  OpenMS  software  framework.  OpenMS   offers   an
       infrastructure  for  the development of mass spectrometry-related software and powerful 2D
       and 3D visualization solutions. OpenMS offers analyses for various quantitation protocols,
       including  label-free  quantitation,  SILAC,  iTRAQ,  SRM,  SWATH…  It  provides  build-in
       algorithms for de-novo identification and database search, as well as  adapters  to  other
       state-of-the  art  tools  like  X!Tandem,  Mascot,  OMSSA…  OpenMS supports the Proteomics
       Standard Initiative (PSI) formats for MS data and supports easy integration of tools  into
       workflow engines like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept and a
       unified parameter handling.


       Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva  Lange,
       Nico  Pfeifer,  Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher
       (2008)   OpenMS  –  an  Open-Source  Software  Framework  for  Mass   Spectrometry.    BMC
       Bioinformatics, 9:163. doi:10.1186/1471-2105-9-163.


       libopenms(3), topp(1), openms-common(7), openms(7),


       This  manual  page  was  written  by  Filippo  Rusconi <>. Permission is
       granted to copy, distribute and/or modify this document under the terms of the GNU General
       Public License, Version 3, published by the Free Software Foundation.

        On  a  Debian system the complete text of the GNU General Public License version 3 can be
       found in the file `/usr/share/common-licenses/GPL-3'.

                                          November 2012                             OPENMS-DOC(7)