NAME

       removeDup - toolkit for processing next-gen sequencing data

DESCRIPTION

       removeDup Version 2.0.1

              Remove duplicated reads.

   Usage:
              ./removeDup [options] -i <input_file> -o <output_file>

       Required arguments:

       -i <string> Name of input file in SAM/BAM format.

       -o <string> Name of output SAM file including filtered reads. The format is

              BAM unless '-S' is specified.

       Optional arguments:

       -S     Generate the SAM format output.

       -r <int>
              Specify the duplication cutoff. All the reads mapped to a location are removed from
              the output if the number of reads mapped to this location is equal or  higher  than
              the cutoff. 10 by default.

       -t <string> A directory storing temporary files generated by the program.

AUTHOR

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.