NAME

       subindel - toolkit for processing next-gen sequencing data

DESCRIPTION

       SubIndel: detect short and long indels

   Usage:
              subindel  -i  <SAM  file> -g <subread index> -o <output VCF> {-d <expected fragment
              distance>} {-I <max indel length>} {--paired-end}

   Example:
              subindel -i  my_paired_end_reads.SAM  -g  my_index  -o  my_result  -d  300  -I  200
              --paired-end

AUTHOR

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.