NAME

       Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL - Create an embl file for the header
       with locations of where genes are in the multifasta alignment of core genes

VERSION

       version 3.13.0

SYNOPSIS

       Create an embl file for the header with locations of where genes are in the multifasta
       alignment of core genes
          use Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL;

          my $obj = Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new(
               output_filename => 'core_alignment_header.embl',
               multifasta_files => [
                   't/data/multifasta_files/1.aln', 't/data/multifasta_files/outof_order.aln',
                   't/data/multifasta_files/2.aln', 't/data/multifasta_files/3.aln'
               ],
               gene_lengths => {
                   't/data/multifasta_files/1.aln'           => 1,
                   't/data/multifasta_files/outof_order.aln' => 10,
                   't/data/multifasta_files/2.aln'           => 100,
                   't/data/multifasta_files/3.aln'           => 1000
               },
          );
          $obj->create_file;

AUTHOR

       Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

       This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

       This is free software, licensed under:

         The GNU General Public License, Version 3, June 2007

perl v5.30.0                            Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL(3pm)