Provided by: genometools_1.6.2+ds-3_amd64 bug

NAME

       gt - The GenomeTools genome analysis system.

SYNOPSIS

       gt [option ...] [tool | script] [argument ...]

DESCRIPTION

       -i [yes|no]
           enter interactive mode after executing tool or script

       -q [yes|no]
           suppress warnings

       -test [yes|no]
           perform unit tests and exit

       -seed [value]
           set seed for random number generator manually. 0 generates a seed from current time
           and process id

       -help
           display help and exit

       -version
           display version information and exit

       Tools:

       •   bed_to_gff3cdschain2dimchseqidscleancompreadscondenseqcongruenceconvertseqcsadotdupfeatencseqencseq2spmevalextractfeatextractseqfastq_samplefeatureindexfingerprintgenomediffgff3gff3_to_gtfgff3validatorgtf_to_gff3hopid_to_md5inlineseq_addinlineseq_splitinterfeatloccheckltrclusteringltrdigestltrharvestmatchtoolmatstatmd5_to_idmergemergefeatmgthmkfeatureindexmkfmindexmmapandreadorffinderpackedindexprebwtreadjoinerrepfindscriptfilterseed_extendselectseqseqfilterseqidsseqmutateseqorderseqstatseqtransformseqtranslatesequniqshreddershulengthdistsimreadssketchsketch_pagesnpperspecksplicesiteinfosplitfastastatsuffixeratortageratortallymertirvishuniquniquesubwtree

       Set the environment variable GT_MEM_BOOKKEEPING=on to enable memory bookkeeping (e.g.,
       like this: env GT_MEM_BOOKKEEPING=on gt).

       Set the environment variable GT_ENV_OPTIONS=-spacepeak to show a spacepeak after program
       run. Set the environment variable GT_ENV_OPTIONS=-showtime to show processing times for
       some program parts if implemented.

       Set the environment variable GT_SEED to an integer value to supply a seed for the random
       number generator. Can be overridden by the -seed option.

       Combinations are possible. Running the gt binary with GT_ENV_OPTIONS=-help shows all
       possible "environment options".

REPORTING BUGS

       Report bugs to https://github.com/genometools/genometools/issues.