Provided by: radiant_2.8.1+dfsg-2_all bug

NAME

       ktImportKrona - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

       Creates a Krona chart from the data in other Krona charts.

       ktImportKrona \

              [options]            \            krona_chart_1[:magnitudes_1][,name_1]           \
              [krona_chart_2[:magnitudes_2][,name_2]] \ ...

       krona_chart
              Krona HTML file created with KronaTools or the Krona  Excel  Template  By  default,
              separate datasets will be created for each input (see [-c]).

       magnitudes
              Optional  file  listing  query  IDs with magnitudes, separated by tabs. This can be
              used to account for  read  length  or  contig  depth  to  obtain  a  more  accurate
              representation   of  abundance.  By  default,  query  sequences  without  specified
              magnitudes will be assigned a magnitude of 1. Magnitude files for assemblies in ACE
              format can be created with ktGetContigMagnitudes.

       name   A  name to show in the list of datasets in the Krona chart (if multiple input files
              are present and [-c] is not specified). By default, the basename of the  file  will
              be used.

       [-o <string>]
              Output file name. [Default: 'krona.krona.html']

       [-n <string>]
              Name of the highest level.

       [-c]   Combine  data  from  each  file,  rather than creating separate datasets within the
              chart.

       [-d <integer>]
              Maximum depth of wedges to include in the chart.

       [-x <integer>]
              Hue (0-360) for "bad" scores.

       [-y <integer>]
              Hue (0-360) for "good" scores.

       [-u <string>]
              URL of Krona resources to use  instead  of  bundling  them  with  the  chart  (e.g.
              "http://krona.sourceforge.net").  Reduces size of charts and allows updates, though
              charts will not work without access to this URL.

       [-qp <string>]
              Url to send query IDs to (instead of listing them) for each wedge.  The  query  IDs
              will  be  sent  as  a comma separated list in the POST variable "queries", with the
              current dataset index (from 0) in the POST variable "dataset". The url can  include
              additional variables encoded via GET.