NAME

       ProDy - Python Package for Protein Dynamics Analysis

DESCRIPTION

       usage: prody [-h] [-c] [-v]

              {anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy} ...

       ProDy: A Python Package for Protein Dynamics Analysis

   options:
       -h, --help
              show this help message and exit

       -c, --cite
              print citation info and exit

       -v, --version
              print ProDy version and exit

   subcommands:
              {anm,gnm,pca,eda,align,blast,biomol,catdcd,contacts,fetch,select,energy}

       anm    perform anisotropic network model calculations

       gnm    perform Gaussian network model calculations

       pca    perform principal component analysis calculations

       eda    perform essential dynamics analysis calculations

       align  align models or structures

       blast  blast search Protein Data Bank

       biomol build biomolecules

       catdcd concatenate dcd files

       contacts
              identify contacts between a target and ligand(s)

       fetch  fetch a PDB file

       select select atoms and write a PDB file

       energy fix missing atoms, solvate and write a file containing energy

       See 'prody <command> -h' for more information on a specific command.