Provided by: phyx_1.3+ds-2_amd64
NAME
pxrr - manual page for pxrr 1.3
SYNOPSIS
pxrr [OPTIONS]...
DESCRIPTION
Reroot (or unroot) a tree file and produce a newick. This will take a newick- or nexus-formatted tree from a file or STDIN. Output is written in newick format.
OPTIONS
-t, --treef=FILE input tree file, STDIN otherwise -g, --outgroups=CSL outgroup sep by commas (NO SPACES!) -f, --namesf=FILE outgroups in a file (each on a line) -r, --ranked turn on ordering of outgroups. will root on first one present -u, --unroot unroot the tree -s, --silent do not error if outgroup(s) not found -o, --outf=FILE output tree file, STOUT otherwise -h, --help display this help and exit -V, --version display version and exit -C, --citation display phyx citation and exit
CITATION
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
AUTHOR
Written by Stephen A. Smith (blackrim), Joseph W. Brown
REPORTING BUGS
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>
COPYRIGHT
Copyright © 2014-2021 FePhyFoFum License GPLv3