NAME

       Raptor  -  A  fast  and  space-efficient pre-filter for querying very large collections of
       nucleotide sequences.

OPTIONS

   Basic options:
       -h, --help
              Prints the help page.

       -hh, --advanced-help
              Prints the help page including advanced options.

       --version
              Prints the version information.

       --copyright
              Prints the copyright/license information.

       --export-help (std::string)
              Export the help page information. Value must be one of [html, man].

       --bins (std::filesystem::path)
              File containing one file per line per bin. The  input  file  must  exist  and  read
              permissions must be granted.

       --input (std::filesystem::path)
              The index to upgrade. Parts: Without suffix _0

       --output (std::filesystem::path)
              Path to new index.

       --window (unsigned 32 bit integer)
              The original window size. Value must be a positive integer.

       --kmer (unsigned 8 bit integer)
              The original kmer size. Value must be in range [1,32].

       --parts (unsigned 8 bit integer)
              Original  index  consisted of this many parts. Default: 1. Value must be a power of
              two.

       --compressed
              Original index was compressed.

VERSION

       Last update: 2021-08-20--no-git
       Raptor version: 2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)
       Sharg version: 1.0.0
       SeqAn version: 3.2.0

URL

       https://github.com/seqan/raptor

LEGAL

       Raptor Copyright: BSD 3-Clause License
       Author: Enrico Seiler
       Contact: enrico.seiler@fu-berlin.de
       SeqAn Copyright: 2006-2022 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
       In your academic works please cite: Raptor: A  fast  and  space-efficient  pre-filter  for
       querying  very large collections of nucleotide sequences; Enrico Seiler, Svenja Mehringer,
       Mitra Darvish, Etienne Turc,  and  Knut  Reinert;  iScience  2021  24  (7):  102782.  doi:
       https://doi.org/10.1016/j.isci.2021.102782
       For full copyright and/or warranty information see --copyright.

raptor 2.0.1 (74f815358db47037e93a56b8262021-08-20--no-git-git)                         RAPTOR(1)