NAME

       csv2xml, gbf2ref, gbf2xml, json2xml, tbl2xml - transmute to XML

SYNOPSIS

       csv2xml|tbl2xml [-set tag] [-rec tag] [-skip N] [-header] [-lower|-upper] [-indent|-flush]
       columnName1 ...

       gbf2ref

       gbf2xml

       json2xml [-set tag] [-rec tag] [-nest flat|recurse|plural|depth]

DESCRIPTION

       These commands all simply invoke corresponding transmute(1) modes; each reads a stream  of
       data from standard input, converts it to XML suitable for -path navigation, and writes the
       result to standard output.  Specifically:

       csv2xml   corresponds to transmute -c2x, converting comma-separated values to XML.

       gbf2ref   corresponds to transmute -g2r, converting from GenBank/GenPept  flatfile  format
                 to Reference Index XML.

       gbf2xml   corresponds  to  transmute -g2x, converting from GenBank/GenPept flatfile format
                 to INSDSeq XML.

       json2xml  corresponds to transmute -j2x, converting JSON to XML.

       tbl2xml   corresponds to transmute -t2x, converting a tab-delimited table to XML.

       There is also an analogous asn2xml wrapper corresponding  to  transmute  -a2x  (converting
       text  ASN.1  to  XML), but Debian systems install it to /usr/lib/ncbi-entrez-direct/bin to
       avoid conflicting with the ncbi-tools-bin package's asn2xml(1).

OPTIONS

       See transmute(1).

SEE ALSO

       ref2pmid(1), transmute(1), xml2fsa(1), xml2tbl(1), xtract(1).