Provided by: libbio-db-gff-perl_1.7.4-1_all
NAME
Bio::DB::GFF::Aggregator::ucsc_acembly -- UCSC acembly aggregator
SYNOPSIS
use Bio::DB::GFF; # Open the sequence database my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql', -dsn => 'dbi:mysql:elegans42', -aggregator => ['transcript','clone'], ); ------------------------------------------------- Aggregator method: transcript Main method: transcript Sub methods: exon CDS 5'UTR 3'UTR TSS PolyA -------------------------------------------------
DESCRIPTION
Bio::DB::GFF::Aggregator::transcript method Title : method Usage : $aggregator->method Function: return the method for the composite object Returns : the string "acembly" Args : none Status : Public part_names Title : part_names Usage : $aggregator->part_names Function: return the methods for the sub-parts Returns : empty list Args : none Status : Public main_name Title : main_name Usage : $aggregator->main_name Function: return the method for the main component Returns : the string "transcript:acembly" Args : none Status : Public
BUGS
None reported.
SEE ALSO
Bio::DB::GFF, Bio::DB::GFF::Aggregator
AUTHOR
Allen Day <allenday@ucla.edu>. Copyright (c) 2002 Allen Day, University of California, Los Angeles. This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.