NAME

       CAI - calculate codon adaptation index for a DNA sequence

SYNOPSIS

       CAI [OPTIONS]

OPTIONS

       -s, --sequence FILE
              The sequence to calculate the CAI for.  [required]

       -r, --reference FILE
              The reference sequences to calculate CAI against.  [required]

       -g, --genetic-code INTEGER
              The genetic code to use. Defaults to 11.

       --help Show this message and exit.