NAME

       bam2wig - Convert bam files to wiggle files. Can be used to generate exonpart hints for
       AUGUSTUS.

SYNOPSIS

       bam2wig [-r region] [-t trackname] <in.bam>

OPTIONS

       File needs to be sorted by Reference ID (i.e. target name) Use "samtools sort <in.bam>" to
       such effect. Use "samtools stats <in.bam> | grep 'is sorted' " to check if the file is
       sorted.

   Parameters:
       -r
           Allows to specify a target region, e.g. 'chr3L:10-250' This option can only be used if
           an index file exists, see: samtools index

       -t
           string provided as track name

AUTHORS

       AUGUSTUS was written by M. Stanke, O. Keller, S. König, L. Gerischer and L. Romoth.

ADDITIONAL DOCUMENTATION

       An exhaustive documentation can be found in the file /usr/share/doc/augustus/README.md.gz.

                                                                                       BAM2WIG(1)