NAME

       bamsplitdiv - split BAM file into a set of BAM files

SYNOPSIS

       bamsplitdiv [options]

DESCRIPTION

       bamsplitdiv  reads  a  BAM  file  via standard input and creates a set of output BAM files
       containing the alignments in the input. Given a positive natural  number  div  bamsplitdiv
       will  create div files. The alignments in the input file will be distributed to the output
       files in a round robin type scheme, i.e. entries 0, div, 2div, 3div, etc. will be  written
       to the first output file, 1,div+1,2div+1, 3div+1, etc. to the second etc.

       The following key=value pairs can be given:

       div=<1>: number of output files

       prefix=<filename>  prefix  for  the  create  files.  The  created  files  will  have names
       ${prefix}_000000.bam, ${prefix}_000001.bam, etc.

       level=<-1|0|1|9|11>: set compression level of the output BAM file. Valid values are

       -1:    zlib/gzip default compression level

       0:     uncompressed

       1:     zlib/gzip level 1 (fast) compression

       9:     zlib/gzip level 9 (best) compression

       If libmaus has been compiled with support for  igzip  (see  https://software.intel.com/en-
       us/articles/igzip-a-high-performance-deflate-compressor-with-optimizations-for-genomic-
       data) then an additional valid value is

       11:    igzip compression

       verbose=<1>: Valid values are

       1:     print progress report on standard error

       0:     do not print progress report

AUTHOR

       Written by German Tischler.

REPORTING BUGS

       Report bugs to <germant@miltenyibiotec.de>

COPYRIGHT

       Copyright © 2009-2013 German Tischler,  ©  2011-2013  Genome  Research  Limited.   License
       GPLv3+: GNU GPL version 3 <http://gnu.org/licenses/gpl.html>
       This  is free software: you are free to change and redistribute it.  There is NO WARRANTY,
       to the extent permitted by law.