NAME

       volume_injection - Volume injection

SYNOPSIS

       volume_injection [options] refImage xform0 inImage0 [xform1 inImage1 ...]

DESCRIPTION

       Reconstruction  a  high-resolution  volume  from  multiple  co-registered (low-resolution)
       images using forward volume injection

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Input Options
       --exclude-first-image, -x
            Exclude first image from reconstruction as a separate registration target image)

       --pass-weight <string>, -W <string>
            Set contribution weight for a pass in the form 'pass:weight'

   Reconstruction Grid Options
       --recon-grid <string>
            Define reconstruction grid as Nx,Ny,Nz:dX,dY,dZ[:Ox,Oy,Oz] (dims:pixel:offset)

       --recon-grid-path <string>, -R <string>
            Give path to grid that defines reconstructed image grid [including offset]  [Default:
            NONE]

       --crop <string>
            Crop reference to pixel region x0,y0,z1:x1,y1,z1

   Volume Injection Options
       --isotropic-injection
            Use  isotropic  volume  injection  [default:  scaled  with  pass image pixel size per
            dimension]

       --injection-kernel-sigma <double>, -S <double>
            Gauss contribution [Default: 1]

       --injection-kernel-radius <integer>, -r <integer>
            VolumeInjectionRadius of affected pixel [Default: 0]

   Output Options
       --output <string>, -o <string>
            Output image path [Default: volume_injection.nii ]

       --write-images-as-float, -F
            Write output images as floating point [default: same as input]

AUTHORS

       Torsten Rohlfing, with contributions from Michael  P.  Hasak,  Greg  Jefferis,  Calvin  R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data  Integration  Component.  From
       April  2009  through September 2011, CMTK development and maintenance was supported by the
       NIBIB under Grant EB008381.