NAME

       dbSwiss - create DBM version of Swiss-Prot data

SYNOPSIS

       /usr/share/librg-utils-perl/dbSwiss [OPTIONS]

       /usr/share/librg-utils-perl/dbSwiss --datadir /data/swissprot --infile
       /data/swissprot/uniprot_sprot.dat

       /usr/share/librg-utils-perl/dbSwiss [--help] [--man]

DESCRIPTION

       dbSwiss creates DBM version of Swiss-Prot data.  This procedure is to replace
       splitSwiss.pl.  splitSwiss.pl saves Swiss-Prot records in separate files resulting in over
       13 million relatively tiny files that take very long to create and rsync.  dbSwiss instead
       saves each record into a DBM database that is optimized for fast retrieval.

OPTIONS

       -d, --datadir=path
           directory of database files, default: '/mnt/project/rost_db/data/swissprot'

       --debug
       --nodebug
       --first20
       --nofirst20
           process only first 20 records, for debugging

       --help
       -i, --infile=path
           Swiss-Prot data flatfile, default:
           '/mnt/project/rost_db/data/swissprot/uniprot_sprot.dat'.

       --man
       --quiet
       --noquiet
           do not print progress status

       --readback
       --noreadback
           read records back after storing and print them

       --table
           name of database table and consequently the base name of database files, default:
           'dbswiss'

       --version
       -w, --workdir=path
           Optional working directory. Automatically created and removed if not defined.

AUTHOR

       Laszlo Kajan <lkajan@rostlab.org>