NAME

       extractBCITrees  - part of mauveAligner package reads all trees and their posterior from a
       set of MrBayes .trprobs files

SYNOPSIS

       extractBCITrees <random seed> <BCI threshold> <max output trees> <MrBayes  .trprobs  input
       file 1 .. N> <nexus output file>

DESCRIPTION

       This  program reads all trees and their posterior from a set of MrBayes .trprobs files and
       sums and normalizes posteriors for each topology.  All trees that meet  a  Bayes  Credible
       Interval  threshold  will be saved, up to some maximum number of trees.  <BCI Threshold> A
       number between 0 and 1 giving the BCI threshold.  0.9  is  a  good  choice.   <max  output
       trees>       Limit  the  output to this many trees.  All trees in the input file must have
       the same number of taxa and the same taxon labels