NAME

       extractseq - Extract regions from a sequence

SYNOPSIS

       extractseq -sequence sequence -regions range [-separate boolean] -outseq seqoutall

       extractseq -help

DESCRIPTION

       extractseq is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Edit" command group(s).

OPTIONS

   Input section
       -sequence sequence

   Required section
       -regions range
           Regions to extract. A set of regions is specified by a set of pairs of positions. The
           positions are integers. They are separated by any non-digit, non-alpha character.
           Examples of region specifications are: 24-45, 56-78 1:45, 67=99;765..888
           1,5,8,10,23,45,57,99 Default value: $(sequence.begin)-$(sequence.end)

   Additional section
       -separate boolean
           If this is set true then each specified region is written out as a separate sequence.
           The name of the sequence is created from the name of the original sequence with the
           start and end positions of the range appended with underscore characters between them,
           eg: XYZ region 2 to 34 is written as: XYZ_2_34 Default value: N

   Output section
       -outseq seqoutall

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       extractseq is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.