NAME

       gdcmclean - Tool to clean a DICOM file.

SYNOPSIS

           gdcmclean [options] file-in file-out
           gdcmclean [options] dir-in  dir-out

DESCRIPTION

       The gdcmclean tool is an cleaning tool.

PARAMETERS

           file-in   DICOM input filename

           file-out  DICOM output filename

       or

           file-in   DICOM input directory

           file-out  DICOM output directory

OPTIONS

       You need to :

   specific options
             -i --input                  DICOM filename / directory
             -o --output                 DICOM filename / directory
             -r --recursive              recursively process (sub-)directories.
                --continue               Do not stop when file found is not DICOM.

   Editing mode options
                --empty    %d,%d         DICOM tag(s) to empty
                           %d,%d,%s      DICOM private tag(s) to empty
                           %s            DICOM keyword/path(s) to empty
                --remove   %d,%d         DICOM tag(s) to remove
                           %d,%d,%s      DICOM private tag(s) to remove
                           %s            DICOM keyword/path(s) to remove
                --scrub    %d,%d         DICOM tag(s) to scrub
                           %d,%d,%s      DICOM private tag(s) to scrub
                           %s            DICOM keyword/path(s) to scrub
                --preserve %s            DICOM path(s) to preserve
                --preserve-missing-private-creator             Whether or not preserve private attributes with missing private creator.
                --preserve-group-length                        Whether or not preserve deprecated group length attributes (will not be re-computed).
                --preserve-illegal                             Whether or not preserve illegal attributes (eg. group 0003...).

   general options
             -h   --help
                    print this help text and exit

             -v   --version
                    print version information and exit

             -V   --verbose
                    verbose mode (warning+error).

             -W   --warning
                    warning mode, print warning information

             -E   --error
                    error mode, print error information

             -D   --debug
                    debug mode, print debug information

TYPICAL USAGE

   Editing mode
       This functionality is not described in the DICOM standard.

       The following example shows how to use editing mode and achieve multiple operations at the
       same time:

       •   Preserve illegal attributes (removed by default),

       •   Empty any 'PN' attributes anywhere in the hierarchy tree, but preserve the DICOM
           attribute value only at location "0010,0010",

       •   Empty the tag (0010,0020) Patient ID, (only if keyword is know internally),

       •   Empty the tag (0070,0084),

       •   Remove the private attributes: (0029,20, SIEMENS MEDCOM HEADER) / (0033,02,MITRA
           OBJECT UTF8 ATTRIBUTES 1.0) / (0043,2a,GEMS_PARM_01). Since (0033,02,MITRA OBJECT UTF8
           ATTRIBUTES 1.0) is defined internally in the private dictionary with Value
           Representation = PN, this attribute will be skipped (since redundant).

       •   Scrub the private attributes: (0029,10,SIEMENS CSA HEADER) / (0029,20,SIEMENS CSA
           HEADER) / (700d,08,TOSHIBA_MEC_MR3) / (0029,90,PMTF INFORMATION DATA)

           $ gdcmclean \
               --recursive --continue \
               --preserve-illegal \
               --empty PN --preserve /0010,0010 \
               --empty PatientID --empty "0070,0084" \
               --remove "0029,20,SIEMENS MEDCOM HEADER" --remove "0033,02,MITRA OBJECT UTF8 ATTRIBUTES 1.0" --remove "0043,2a,GEMS_PARM_01" \
                --scrub "0029,10,SIEMENS CSA HEADER" --scrub "0029,20,SIEMENS CSA HEADER" \
                --scrub "700d,08,TOSHIBA_MEC_MR3" \
                --scrub "0029,90,PMTF INFORMATION DATA" --scrub "0029,90,TOSHIBA_MEC_MR3" \
               input_folder output_folder

   DICOM Path
       For ease of use on shell cmmand the syntax allow for the '/' separator in the DICOM Path
       notation. So the following is valid

           "/0040,0100/1/0040,0006"

       However Private Creator can use all of Value Representation LO definition. So in some case
       you will be required to use backslash as separator (since illegal in VR:LO):

           "\\4109,2,Applicare/Centricity Radiology Web/Version 1.0"

   Safe Private Attributes
       It is currently not possible to empty/remove any private attribute listed in the Safe
       Private Attributes table at:

       https://dicom.nema.org/medical/dicom/current/output/chtml/part15/sect_E.3.10.html#table_E.3.10-1

SEE ALSO

       gdcmanon(1), gdcmdump(1), gdcmdiff(1)

AUTHOR

       Mathieu Malaterre
           Main developer

COPYRIGHT

       Copyright © 2006, 2011 Mathieu Malaterre