NAME

       glistcompare - generate union, intersection or difference of k-mers from two list files

SYNOPSIS

       glistcompare <INPUTLIST1> <INPUTLIST2> [OPTIONS]

OPTIONS

       -v, --version            - print version information and exit

       -h, --help               - print this usage screen and exit

       -u, --union              - union of input lists

       -i, --intersection       - intersection of input lists

       -d, --difference         - difference of input lists

       -dd, --double_difference - double difference of input lists

       -du, --diff_union        - subtract first list from the second and finds difference

       -mm, --mismatch
              NUMBER  -  specify  number  of  mismatches  (default  0, can be used with -diff and
              -ddiff)

       -c, --cutoff NUMBER      - specify frequency cut-off (default 1)

       -o, --outputname STRING  - specify output name (default "out")

       -r, --rule STRING        - specify rule how final  frequencies  are  calculated  (default,
       add, subtract, min, max, first, second, 1, 2)
              NOTE:  rules  min,  subtract,  first  and  second can only be used with finding the
              intersection.

       -ss --subset METHOD SIZE - make subset with given method (rand_unique)

       --count_only             - output count of k-mers instead of k-mers themself

       --disable_scouts         - disable list read-ahead in background thread

       -D                       - increase debug level

EXAMPLES

        You could find some usage examples in /usr/share/doc/genometester/README.GenomeTester4.md

SEE ALSO

        glistquery(1), glistmaker(1), gmer_caller(1), gmer_counter(1)