NAME

       ktGetTaxIDFromAcc - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

       Description:

              Translates  accessions  (from  arguments  or  <stdin>)  to  NCBI  taxonomy IDs. The
              accession  can  be  bare  or  in  the  fourth  field   of   pipe   notation   (e.g.
              "gi|12345|xx|ABC123.1|",  ignoring  fasta  tag markers [">"]). Inputs that are bare
              numbers will be assumed to be taxonomy IDs already and preserved.  Accessions  with
              no taxonomy IDs in the database will return 0.

       Usage:

              ktGetTaxIDFromAcc [options] [acc1 acc2 ...] [< acc_list] > tax_ID_list

              Command line example:

              ktGetTaxIDFromAcc A00001.1 A00002.1

              Fasta tag example:

              grep ">" sequence | ktGetTaxIDFromAcc > sequence.tax

OPTIONS

       [-p]   Prepend tax IDs to the original lines (separated by tabs).

       [-a]   Append tax IDs to the original lines (separated by tabs).

       [-f] <integer>
              Field of accessions. [Default: '1']

       [-tax <string>
              Path to directory containing a taxonomy database to use.