NAME

       ktImportMGRAST - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

       Creates a Krona chart from MG-RAST organism or functional analyses.

       ktImportMGRAST \

              [options] \ mgrast_table_1[,name_1] \ [mgrast_table_2[,name_2]] \ ...

       mgrast_table
              A  table exported from MG-RAST. It can be from organism or functional analysis, but
              all tables being imported should be consistent. By default, separate datasets  will
              be created for each input (see [-c]).

       name   A  name to show in the list of datasets in the Krona chart (if multiple input files
              are present and [-c] is not specified). By default, the basename of the  file  will
              be used.

       [-o <string>]
              Output file name. [Default: 'mg-rast.krona.html']

       [-n <string>]
              Name of the highest level. [Default: 'all']

       [-c]   Combine  data  from  each  file,  rather than creating separate datasets within the
              chart.

       [-d <integer>]
              Maximum depth of wedges to include in the chart.

       [-x <integer>]
              Hue (0-360) for "bad" scores. [Default: '0']

       [-y <integer>]
              Hue (0-360) for "good" scores. [Default: '120']

       [-p]   Use percent identity for average scores instead of log[10] e-value.

       [-u <string>]
              URL of Krona resources to use  instead  of  bundling  them  with  the  chart  (e.g.
              "http://krona.sourceforge.net").  Reduces size of charts and allows updates, though
              charts will not work without access to this URL.