NAME

       lav2murasaki.pl -- convert a LAV file (ie: from Blastz) into a Murasaki set of files

SYNOPSIS

       lav2murasaki.pl [options] <input file>

OPTIONS

       --ungapped|-u => LAV files have "gapped regions" composed of "ungapped regions". Using
       this option creates 1 anchor for each ungapped region (this also provides a .bitscore
       file, as each ungapped region contains a percent identity field).

       --verbose|-v => More verbose output to stdout. Can be applied up to 3 times (anything
       beyond 1 gets messy though, as each anchor gets 1 line of output).

COMMENTS

       You and Toadofsky make beautiful music!