NAME

       mecat - Generate config file or assemble, trim or correct SMRT data

SYNOPSIS

       mecat correct|assemble|config cfg_fname

DESCRIPTION

       MECAT  (v2)  is  an ultra-fast and accurate mapping, error correcting and de novo assembly
       tools for single molecula sequencing (SMRT) reads.

       The parameters are defined as below:

       correct:
                   Correct rawreads

       trim:       Trim corrected reads

       assemble:
                   Generate contigs

       config:
                   Generate default config file