NAME

       mia-2dmyoseries-dice - Evaluate the dice index between segmentations.

SYNOPSIS

       mia-2dmyoseries-dice -i <input> [options]

DESCRIPTION

       mia-2dmyoseries-dice  This  program  is  used  to  evaluate  the  per-frame  dice index of
       segmented regions of an image with respect to the segmentation of a reference  frame  from
       the same series.

OPTIONS

              -i --input=(input, required); string
                     original segmentation set

              -k --skip=2
                     images to skip atthe bgin of the series

              -r --reference=20
                     reference image

   Help & Info
              -V --verbose=warning
                     verbosity  of  output,  print messages of given level and higher priorities.
                     Supported priorities starting at lowest level are:

                        trace ‐ Function call trace
                        debug ‐ Debug output
                        info ‐ Low level messages
                        message ‐ Normal messages
                        warning ‐ Warnings
                        fail ‐ Report test failures
                        error ‐ Report errors
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower
                     or  equal  to  the  number  of  logical processor cores in the machine. (-1:
                     automatic estimation).

EXAMPLE

       Evaluate the dice index of segmentation set segment.set with reference 30 and skipping the
       first two frames.

       mia-2dmyoseries-dice -i segment.set -r 30 -k 2

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This  software  is  Copyright  (c) 1999‐2015 Leipzig, Germany and Madrid, Spain.  It comes
       with  ABSOLUTELY  NO WARRANTY  and  you  may redistribute it under the terms  of  the  GNU
       GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
       option '--copyright'.