NAME

       mia-3deval-transformquantity - Evaluate derivative of a transformation

SYNOPSIS

       mia-3deval-transformquantity -o <out-file> -t <transformation> [options]

DESCRIPTION

       mia-3deval-transformquantity  Get  derivative  a transformation obtained by by using image
       registration for any given positions in 3D. The position data is given in CSV format:
          id;time;x;y;z;reserved The output data will be stored in a binary file  with  an  ascii
       header describing the data. An example header is given below:

       MIA tensorfield {
         dim=3          #number of dimensions of the data
         components=13  #number of components per element
         component_description=vector3,scalar,matrix3x3 #interpretation of components
         elements=20    #number of elements in file
         interpretation=strain #interpretation of elements (strain|derivative)
         style=sparse   #storage style (sparse|grid)
         repn=float32   #representation of values
         size=1000 1000 200 #grid size of the transformation
         endian=low     #endianess of binary data (low|big) }

       This example header has to be interpreted like follows: three-dimensional data, each entry
       consists of 13 values the values etry consists of a 3D vector, a scalar, and a 3x3  matrix
       (saved  in  row-major format).The data records represent strain tensors, and only a sparse
       set of points is given. The values are given  as  single  floating  point  (32  bit).  The
       original transformation field corresponds to images of 1000x1000x200 voxels and the binary
       data is stored in low endian format.

OPTIONS

   File-IO
              -i --in-file=(input); string
                     input point set, if this parameter is  given  a  sparse  evaluation  of  the
                     quantity  will  be  done,  otherwise the quantity is evaluated for each grid
                     point of the transformation range.

              -o --out-file=(required, output); string
                     output strains file, for a format description see above.

              -t --transformation=(input, required); io
                     transformation of which the quantity will be evaluated.
                      For supported file types see PLUGINS:3dtransform/io

   Parameters
              -q --quantity=strain
                     Specify the quantity to be evaluated at the given points

                        derivative ‐ Evaluate the transformation derivative at the given points
                        strain ‐ Evaluate the strain tensor at the given points

   Help & Info
              -V --verbose=warning
                     verbosity of output, print messages of given level  and  higher  priorities.
                     Supported priorities starting at lowest level are:

                        trace ‐ Function call trace
                        debug ‐ Debug output
                        info ‐ Low level messages
                        message ‐ Normal messages
                        warning ‐ Warnings
                        fail ‐ Report test failures
                        error ‐ Report errors
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower
                     or equal to the number of logical  processor  cores  in  the  machine.  (-1:
                     automatic estimation).

PLUGINS: 3dtransform/io

       bbs       Binary (non-portable) serialized IO of 3D transformations

                     Recognized file extensions:  .bbs

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       vista     Vista storage of 3D transformations

                     Recognized file extensions:  .v, .v3dt

       xml       XML serialized IO of 3D transformations

                     Recognized file extensions:  .x3dt

EXAMPLE

       Derivative  of  the  transformation  change.v3df  for  each   point given in input.csv are
       evaluated and written to output.s.

       mia-3deval-transformquantity -i input.csv -o output.s --transformation change.v3df

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This software is Copyright (c) 1999‐2015 Leipzig, Germany and  Madrid,  Spain.   It  comes
       with   ABSOLUTELY   NO  WARRANTY  and  you  may redistribute it under the terms of the GNU
       GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
       option '--copyright'.