Provided by: mia-tools_2.4.7-13_amd64
NAME
mia-3dlerp - Linearly combine two 3D images.
SYNOPSIS
mia-3dlerp -1 <first> -2 <second> -o <out-file> -p <positions> [options]
DESCRIPTION
mia-3dlerp merge two images by linear combination.
OPTIONS
-1 --first=(required, input); io first input image For supported file types see PLUGINS:3dimage/io -2 --second=(required, input); io second input image For supported file types see PLUGINS:3dimage/io -o --out-file=(required, output); io linearly interpolated image For supported file types see PLUGINS:3dimage/io -p --positions=(required); vfloat image series positions (first, target, second) Help & Info -V --verbose=warning verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are: trace ‐ Function call trace debug ‐ Debug output info ‐ Low level messages message ‐ Normal messages warning ‐ Warnings fail ‐ Report test failures error ‐ Report errors fatal ‐ Report only fatal errors --copyright print copyright information -h --help print this help -? --usage print a short help --version print the version number and exit Processing --threads=-1 Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation). Test --selftest=(); None run a self test of the program
PLUGINS: 3dimage/io
analyze Analyze 7.5 image Recognized file extensions: .HDR, .hdr Supported element types: unsigned 8 bit, signed 16 bit, signed 32 bit, floating point 32 bit, floating point 64 bit datapool Virtual IO to and from the internal data pool Recognized file extensions: .@ dicom Dicom image series as 3D Recognized file extensions: .DCM, .dcm Supported element types: signed 16 bit, unsigned 16 bit hdf5 HDF5 3D image IO Recognized file extensions: .H5, .h5 Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit inria INRIA image Recognized file extensions: .INR, .inr Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit mhd MetaIO 3D image IO using the VTK implementation (experimental). Recognized file extensions: .MHA, .MHD, .mha, .mhd Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit nifti NIFTI-1 3D image IO. The orientation is transformed in the same way like it is done with 'dicomtonifti --no-reorder' from the vtk-dicom package. Recognized file extensions: .NII, .nii Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit vff VFF Sun raster format Recognized file extensions: .VFF, .vff Supported element types: unsigned 8 bit, signed 16 bit vista Vista 3D Recognized file extensions: .-, .V, .VISTA, .v, .vista Supported element types: binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit vti 3D image VTK-XML in- and output (experimental). Recognized file extensions: .VTI, .vti Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit vtk 3D VTK image legacy in- and output (experimental). Recognized file extensions: .VTK, .VTKIMAGE, .vtk, .vtkimage Supported element types: signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit
EXAMPLE
Combine image inputA.v and inputB.v by using position coordinates 4, 7, and 9. This means the output pixel values will be evaluated according to (9-7)/(9-4) * A + (7-4)/(9-4) * B The result image will be written to output.v mia-3dlerp -1 inputA.v -2 inputB.v -p 4,7,9 -o output.v
AUTHOR(s)
Gert Wollny
COPYRIGHT
This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.