NAME

       nthash - Recursive hash function for hashing all possible k-mers in a DNA/RNA sequence

SYNOPSIS

       ntHash -k VAR -o VAR [-f VAR] [-h] [-s VAR] [--long] [--binary] [--verbose] files

DESCRIPTION

       Unknown argument: --help

   Positional arguments:
       files  Input sequence files [nargs: 0 or more] [required]

   Optional arguments:
       -v, --version prints version information and exits

       -k     k-mer size [required]

       -o     Output file (for -f collect) or directory path [required]

       -f     Output  file organization (store hashes for each 'file', 'record', or 'collect' all
              hashes into a single file [default: "file"]

       -h     Number of hashes per k-mer/seed [default: 1]

       -s     Input spaced seed patterns separated by commas  (e.g.  1110111,11011011).  Performs
              k-mer hashing if no value provided.

       --long Optimize file reader for long sequences (>5kbp)

       --binary
              Output hashes in binary files (otherwise plain text)

       --verbose
              Print progress to stdout

AUTHOR

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.