NAME

       pxcltr - general tree cleaner

SYNOPSIS

       pxcltr [OPTIONS]...

DESCRIPTION

       General tree cleaner.  Removes annotations (node labels), 'knuckles' (2-degree nodes), and
       root edges to  generate  a  'vanilla'  newick  representation.   By  default  removes  all
       properties.  Alternatively choose 1 property.  This will take a newick- or nexus-formatted
       tree from a file or STDIN.  Output is written in newick format.

OPTIONS

       -t, --treef=FILE
              input treefile, STDIN otherwise

       -r, --root
              remove root edge (if present)

       -l, --labels
              remove internal node labels

       -k, --knuckles
              remove 2-degree internal nodes

       -o, --outf=FILE
              output file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx:  phylogenetic  tools
       for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Joseph W. Brown

REPORTING BUGS

       Report    bugs    to:    <https://github.com/FePhyFoFum/phyx/issues>   phyx   home   page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2017-2021 FePhyFoFum License GPLv3