NAME

       pxcontrates - continuous character rate estimation with Brownian and OU

SYNOPSIS

       pxcontrates [OPTIONS]...

DESCRIPTION

       Continuous  character rate estimation with Brownian and OU.  This will take fasta, phylip,
       and nexus formats from a file or STDIN.

OPTIONS

       -c, --charf=FILE
              input character file, STDIN otherwise

       -t, --treef=FILE
              input tree file, STDIN otherwise

       -a, --analysis=NUM
              analysis type (0=anc[DEFAULT], 1=ratetest)

       -o, --outf=FILE
              output sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx:  phylogenetic  tools
       for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Stephen A. Smith (blackrim)

REPORTING BUGS

       Report    bugs    to:    <https://github.com/FePhyFoFum/phyx/issues>   phyx   home   page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2013-2021 FePhyFoFum License GPLv3