NAME

       pxlog - MCMC log file manipulator

SYNOPSIS

       pxlog [OPTIONS]...

DESCRIPTION

       MCMC  log  file  manipulator.   Can combine and resample parameters or trees across files.
       Log files need not contain the same number of samples.  Input files may be indicated using
       wildcards  e.g.  '*.trees'  Parameter  log  files are expected to be whitespace delimited.
       *NOTE* All values are in terms of number of SAMPLES (NOT generations).

OPTIONS

       -p, --parmf=FILE
              input parameter log file(s)

       -t, --treef=FILE
              input tree log file(s)

       -b, --burnin=INT
              number of samples to exclude at the beginning of a file

       -n, --thin=INT
              interval of resampling

       -i, --info
              calculate log file attributes and exit

       -s, --summarize
              summary statistics of samples (parameter logs only)

       -c, --columns
              print out column names (parameter logs only)

       -d, --delete=CSL
              delete parm columns by 1-index sep by commas (NO SPACES!)

       -k, --keep=CSL
              keep only parm columns by 1-index sep by commas (NO SPACES!)

       -v, --verbose
              make the output more verbose

       -o, --outf=FILE
              output file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx:  phylogenetic  tools
       for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Joseph W. Brown

REPORTING BUGS

       Report    bugs    to:    <https://github.com/FePhyFoFum/phyx/issues>   phyx   home   page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2016-2021 FePhyFoFum License GPLv3