NAME

       pxvcf2fa - convert vcf file to fasta

SYNOPSIS

       pxvcf2fa [OPTIONS]...

DESCRIPTION

       Convert  vcf  file  to  fasta.  Currently only handles haploid data; phased data will come
       soon.  Data can be read from a file or STDIN.

OPTIONS

       -s, --seqf=FILE
              input vcf file, STDIN otherwise

       -u, --uppercase
              export characters in uppercase

       -o, --outf=FILE
              output fasta sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx:  phylogenetic  tools
       for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Joseph W. Brown

REPORTING BUGS

       Report    bugs    to:    <https://github.com/FePhyFoFum/phyx/issues>   phyx   home   page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2013-2021 FePhyFoFum License GPLv3