Provided by: gasic_0.0.r19-8_all
NAME
quality_check - perform a sanity check on the mapping results (SAM file)
SYNOPSIS
quality_check [Options] SAMFILE
DESCRIPTION
Perform a sanity check on the mapping results (SAM file). This tool analyzes the output of the read mapper and provides useful information to the user to decide whether the set of reference sequences and the mapper settings are feasible for the given dataset.
OPTIONS
SAMFILE Name of the SAM file to analyze -h, --help show this help message and exit -o OUT, --outpath=OUT Path to the directory for the analysis output. [default: ./]