NAME

       rdp-alignment: - Ribosomal Database Project (RDP) alignment tools package

SYNOPSIS

       rdp-alignment <subcommand> <options>

DESCRIPTION

       The  Alignment  tools package contains commands to do defined community analysis, pairwise
       alignment and hidden markov model (HMMER3 models, no training).

OPTIONS

       List of subcommands:

       alignment-merger
              - Merge alignments

       pairwise-knn
              - Compute k-nearest-neighbors by pairwise alignment

       compare-error-type
              - Detect insertion, deletion and substitution  errors  in  sequences  comparing  to
              reference sequences

       align-nucl-to-prot
              - Transfer a sequence alignment from protein sequences to nucleotide sequences

       rm-partialseq
              - remove partial sequences based on pairwise alignment to reference sequences