NAME

       reapr-perfectmap - make perfect uniquely mapping plot files

SYNOPSIS

       reapr perfectmap <assembly.fa> <reads_1.fastq> <reads_2.fastq> <avginsertsize> <outprefix>

DESCRIPTION

       Note: the reads can be gzipped. If the extension is '.gz', then they are assumed to be
       gzipped and dealt with accordingly (i.e. called something like <reads_1.fastq.gz>
       <reads_2.fastq.gz>).

           Important
           all reads must be the same length.

SEE ALSO

       reapr(1)

                                                                              REAPR-PERFECTMAP(1)