NAME

       tradis_comparison  -  bio-tradis: compares two experimental conditions using the method of
       Dembek et al.

SYNOPSIS

       tradis_comparison [-h] [-f] [-t  read  cutoff]  [-o  outputfile.csv]  [-p  outputplot.pdf]
       --controls controls.txt --conditions conditions.txt

DESCRIPTION

       Compares  two  experimental  conditions using the method of Dembek et al.  mBio 2015. Read
       counts per gene are compared using edgeR. This analysis requires experimental replicates.

OPTIONS

   Required Arguments:
       --controls
              control libraries, generally growth in a permissive condition

       --conditions
              libraries exposed to the experimental condition being compared

   Optional Arguments:
       -o     output filename

       -p     output filename for diagnostic plots

       -f     enable filtering on minimum read counts

       -t     if --filter is enabled, sets minimum read count necessary in one  condition  for  a
              gene to be included in the comparison.

AUTHOR

       This  manpage was written by Andreas Tille for the Debian distribution and can be used for
       any other usage of the program.