Provided by: libvcflib-tools_1.0.9+dfsg1-2_amd64 bug

NAME
       wcFst


SYNOPSIS
       wcFst  –target  0,1,2,3,4,5,6,7 –background 11,12,13,16,17,19,22 –file my.vcf –deltaaf 0.1
       –type PL


DESCRIPTION
       wcFst is Weir & Cockerham’s Fst for two populations.  Negative values are VALID, they  are
       sites  which  can be treated as zero Fst.  For more information see Evolution, Vol.  38 N.
       6 Nov 1984.  Specifically wcFst uses equations 1,2,3,4.


OPTIONS
              Output : 3 columns :
                   1. seqid
                   2. position
                   3. target allele frequency
                   4. background allele frequency
                   5. **wcFst**

              required: t,target     -- argument: a zero based comma separated list of target individuals corrisponding to VCF columns
              required: b,background -- argument: a zero based comma separated list of background individuals corrisponding to VCF columns
              required: f,file       -- argument: proper formatted VCF
              required, y,type       -- argument: genotype likelihood format; genotype : GT,GL,PL,GP
              optional: r,region     -- argument: a tabix compliant genomic range: seqid or seqid:start-end
              optional: d,deltaaf    -- argument: skip sites where the difference in allele frequencies is less than deltaaf, default is zero

              Type: statistics


EXIT VALUES
       0      Success

       not 0  Failure


SEE ALSO
       vcflib(1)


OTHER
LICENSE
       Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.  MIT licensed.


AUTHORS
       Erik Garrison and vcflib contributors.