Provided by: libbio-db-hts-perl_3.01-4_amd64
LICENSE
Copyright [2015-2018] EMBL-European Bioinformatics Institute Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
NAME
Bio::DB::HTS::Constants -- Constants for use with SAM/BAM
SYNOPSIS
use Bio::DB::HTS::Constants; my $pad_flag = BAM_CPAD;
DESCRIPTION
This module exports several constants for use with the SAM/BAM module. See the SAM documentation for their interpretation. Cigar operations BAM_CIGAR_SHIFT BAM_CIGAR_MASK BAM_CMATCH BAM_CINS BAM_CDEL BAM_CREF_SKIP BAM_CSOFT_CLIP BAM_CHARD_CLIP BAM_CPAD FLAGS A hashref that maps flag values to human-readable names. For example: FLAGS->{0x0008} == 'M_UNMAPPED' RFLAGS The reverse of FLAGS: RFLAGS->{M_UNMAPPED} == 0x0008
AUTHOR
Rishi Nag <rishi@ebi.ac.uk<gt>
SEE ALSO
Bio::Perl, Bio::DB::HTS, Bio::DB::Bam::Alignment