Provided by: libbio-perl-perl_1.7.8-1_all
NAME
Bio::IdCollectionI - interface for objects with multiple identifiers
SYNOPSIS
# to test this is an identifiable collection object $obj->isa("Bio::IdCollectionI") || $obj->throw("$obj does not implement the Bio::IdCollectionI interface"); # accessors @authorities = $obj->id_authorities(); @ids = $obj->ids(); $id = $obj->ids($authority);
DESCRIPTION
This interface describes methods expected on objects that have multiple identifiers, each of which is controlled by a different authority.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web: https://github.com/bioperl/bioperl-live/issues
AUTHOR - Lincoln Stein
Email lstein@cshl.org
Implementation Specific Functions
These functions are the ones that a specific implementation must define. id_authorities Title : id_authorities Usage : @array = $obj->id_authorities() Function: Return the authorities which have names for this object. The authorities can then be used to select ids. Returns : An array Status : Virtual ids Title : ids Usage : @ids = $obj->ids([$authority1,$authority2...]) Function: return a list of Bio::IdentifiableI objects, optionally filtered by the list of authorities. Returns : A list of Bio::IdentifiableI objects. Status : Virtual