Provided by: libbio-perl-perl_1.7.8-1_all
NAME
Bio::Seq::SeqFastaSpeedFactory - Rapid creation of Bio::Seq objects through a factory
SYNOPSIS
use Bio::Seq::SeqFastaSpeedFactory; my $factory = Bio::Seq::SeqFastaSpeedFactory->new(); my $seq = $factory->create( -seq => 'WYRAVLC', -id => 'name' );
DESCRIPTION
This factory was designed to build Bio::Seq objects as quickly as possible, but is not as generic as Bio::Seq::SeqFactory. It can be used to create sequences from non-rich file formats. The Bio::SeqIO::fasta sequence parser uses this factory.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://github.com/bioperl/bioperl-live/issues
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::Seq::SeqFastaSpeedFactory->new(); Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object Returns : Bio::Seq::SeqFastaSpeedFactory Args : None create Title : create Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name'); Function: Instantiates a new Bio::Seq object, correctly built but very fast, knowing stuff about Bio::PrimarySeq and Bio::Seq Returns : A Bio::Seq object Args : Initialization parameters for the sequence object we want: -id -primary_id -display_id -desc -seq -alphabet