Provided by: libbio-perl-perl_1.7.8-1_all
NAME
Bio::TreeIO::tabtree - A simple output format which displays a tree as an ASCII drawing
SYNOPSIS
use Bio::TreeIO; my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick'); my $out = Bio::TreeIO->new(-file => '>output', -format => 'tabtree'); while( my $tree = $in->next_tree ) { $out->write_tree($tree); }
DESCRIPTION
This is a made up format just for outputting trees as an ASCII drawing.
FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://github.com/bioperl/bioperl-live/issues
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : my $obj = Bio::TreeIO::tabtree->new(); Function: Builds a new Bio::TreeIO::tabtree object Returns : Bio::TreeIO::tabtree Args : write_tree Title : write_tree Usage : $treeio->write_tree($tree); Function: Write a tree out to data stream in newick/phylip format Returns : none Args : Bio::Tree::TreeI object next_tree Title : next_tree Usage : Function: Sorry not possible with this format Returns : none Args : none