NAME

       daligner - local alignment discovery between long nucleotide sequencing reads

SYNOPSIS

       daligner [options] files...

DESCRIPTION

       These tools permit one to find all significant local alignments between reads encoded in a
       Dazzler database.  The assumption is that the reads are from a Pacific Biosciences  RS  II
       long read sequencer.  That is, the reads are long and noisy, up to 15% on average.

OPTIONS

       For   a   complete   description   of   available   commands   and   their   options,  see
       /usr/share/doc/daligner/README.md

                                           October 2016                               DALIGNER(1)