NAME

       bed2bed_display - Convert BED file to BED format suitable for displaying ChIP-seq peaks.

SYNOPSIS

       bed2bed_display [options] [-a <min BED score>] [-b <max BED score>] [<] <BED file|stdin>

DESCRIPTION

              - version 1.5.5 where options are:

       -d|--debug
              Produce Debug information

       -h|--help
              Show this Help text

       -f|--feature <ft>
              Set Feature name <ft>

       -o|--oformat <1|2>
              Set output Format (1:BED[Def] 2:BedGraph)

       --name <name>
              Set name for track name field [def. name=SGA-feature]

       --desc <desc>
              Set track description field [def. desc="ChIP-Seq Custom data"]

       --color <col>
              Define the track color in comma-separated RGB values [def. 100,100,100]

       --autoscale
              <on|off>     Data viewing paramenter: set auto-scale to UCSC data view [def=OFF]

       --always0
              <on|off>     Data viewing paramenter: always include zero [def=OFF]

       --wfunction
              <func>             Data       viewing      paramenter:      windowing      function
              [def=mean+whiskers|maximum|mean|minimum]

       --smoothing
              <grade>        Data   viewing    paramenter:    smoothing    window    [def=OFF[0],
              <grade>=0,2..16]

       --visibility <mode>
              Display mode: [def=dense|full|hide] or [def=1|2|3]

              Convert BED file to BED format suitable for displaying ChIP-seq peaks.  Two formats
              are supported: 1) BED Track with Score field; 2) BedGraph.  For BED  track  format,
              only the graphical parameter 'visibility' can be set.

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.