NAME

       bioawk - extension of awk for biological sequence analysis

DESCRIPTION

   bed:
              1:chrom  2:start  3:end  4:name  5:score  6:strand  7:thickstart  8:thickend  9:rgb
              10:blockcount 11:blocksizes 12:blockstarts

   sam:
              1:qname 2:flag 3:rname 4:pos 5:mapq 6:cigar 7:rnext 8:pnext 9:tlen 10:seq 11:qual

   vcf:
              1:chrom 2:pos 3:id 4:ref 5:alt 6:qual 7:filter 8:info

   gff:
              1:seqname 2:source  3:feature  4:start  5:end  6:score  7:filter  8:strand  9:group
              10:attribute

   fastx:
              1:name 2:seq 3:qual 4:comment

AUTHOR

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.