NAME

       reorient - Reorientation

SYNOPSIS

       reorient [options] new-orientation infile outfile

DESCRIPTION

       Convert between image orientations, i.e., physically re-order pixel array and adapt stored
       anatomical orientation information

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --input-orientation <string>, -i <string>
            Override input orientation. This is a three-letter code,  e.g.,  'RAS',  'LPI',  etc.
            [Default: NONE]

       --output-orientation <string>, -o <string>
            Override  output orientation. Default is 'RAS', or the closest match supported by the
            output image file format [Default: NONE]

       --output-space <string>
            Override output coordinate space (e.g., 'RAS', 'LAS', 'LPS'). This  does  not  affect
            the array order. Default is to write image in the input image space.  [Default: NONE]

AUTHORS

       Torsten  Rohlfing,  with  contributions  from  Michael  P. Hasak, Greg Jefferis, Calvin R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol  and  Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From
       April 2009 through September 2011, CMTK development and maintenance was supported  by  the
       NIBIB under Grant EB008381.