NAME

       cnvkit_target - Transform bait intervals into targets more suitable for CNVkit.

DESCRIPTION

       usage: cnvkit target [-h] [--annotate ANNOTATE] [--short-names] [--split]

       [-a AVG_SIZE] [-o FILENAME]
              interval

   positional arguments:
       interval
              BED or interval file listing the targeted regions.

   optional arguments:
       -h, --help
              show this help message and exit

       --annotate ANNOTATE
              Use  gene models from this file to assign names to the target regions. Format: UCSC
              refFlat.txt or ensFlat.txt  file  (preferred),  or  BED,  interval  list,  GFF,  or
              similar.

       --short-names
              Reduce multi-accession bait labels to be short and consistent.

       --split
              Split large tiled intervals into smaller, consecutive targets.

       -a AVG_SIZE, --avg-size AVG_SIZE
              Average   size   of   split   target  bins  (results  are  approximate).  [Default:
              266.6666666666667]

       -o FILENAME, --output FILENAME
              Output file name.